Transcript: lnc-TSPAN9-1:2

Basic information

LNCipedia transcript ID: lnc-TSPAN9-1:2 
LNCipedia gene ID: lnc-TSPAN9-1
Ensembl Gene ID: ENSG00000236908
Ensembl Transcript ID: ENST00000543036
Location (hg38): chr12:3319441-3325340
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 641 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000543036; ENST00000543036.1; RP5-1063M23.2-002; OTTHUMT00000398634.1; NONHSAT025513
Alternative gene names: ENSG00000236908; RP5-1063M23.2; ENSG00000236908.2; OTTHUMG00000168182.1; AC005865.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -191.237 non-coding 
CPAT coding probability 32.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSPAN9-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPAN9-1:2
3.1 lnc-TSPAN9-1:2
4.0 lnc-TSPAN9-1:2
4.1 lnc-TSPAN9-1:2
5.0 lnc-TSPAN9-1:2
5.1 lnc-CLEC4D-118:8
5.2 lnc-TSPAN9-1:2