Transcript: lnc-TSR3-5:1

Basic information

LNCipedia transcript ID: lnc-TSR3-5:1 
LNCipedia gene ID: lnc-TSR3-5
Ensembl Gene ID: ENSG00000260710
Ensembl Transcript ID: ENST00000561649
Location (hg38): chr16:1294551-1299166
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 320 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561649.1; RP11-616M22.7-001; OTTHUMT00000421621.1; NONHSAT051932
Alternative gene names: ENSG00000260710.1; RP11-616M22.7; OTTHUMG00000172999.1; AC120498.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.3345 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSR3-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-616M22.6.1-2:1
4.0 lnc-RP11-616M22.6.1-2:1
4.1 lnc-RP11-616M22.6.1-2:1
5.0 lnc-RP11-616M22.6.1-2:1
5.1 lnc-PKMYT1-94:1
5.2 lnc-TSR3-5:1