Transcript: lnc-USP34-7:2

Basic information

LNCipedia transcript ID: lnc-USP34-7:2 
LNCipedia gene ID: lnc-USP34-7
Ensembl Gene ID: ENSG00000271889
Ensembl Transcript ID: ENST00000606876
Location (hg38): chr2:61161698-61162105
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 289 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606876.1
Alternative gene names: ENSG00000271889.1; RP11-493E12.1; AC016747.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.343 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP34-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-USP34-7:2
4.0 lnc-USP34-7:2
4.1 lnc-USP34-7:2
5.0 lnc-USP34-7:2
5.1 lnc-PPP4R3B-82:2
5.2 lnc-USP34-7:2