Transcript: lnc-ZBTB18-2:1

Basic information

LNCipedia transcript ID: lnc-ZBTB18-2:1 
LNCipedia gene ID: lnc-ZBTB18-2
Location (hg38): chr1:243917372-243978481
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 227 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00001348
Alternative gene names: XLOC_000639; linc-ZNF238


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -376.5572 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZBTB18-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF238-2:1
3.1 lnc-ZNF238-2:1
4.0 lnc-ZNF238-2:1
4.1 lnc-ZNF238-2:1
5.0 lnc-ZNF238-2:1
5.1 lnc-KMO-34:1
5.2 lnc-ZBTB18-2:1