Transcript: lnc-ZC3H12D-4:1

Basic information

LNCipedia transcript ID: lnc-ZC3H12D-4:1 
LNCipedia gene ID: lnc-ZC3H12D-4
Ensembl Gene ID: ENSG00000224658
Ensembl Transcript ID: ENST00000423268
Location (hg38): chr6:148237585-148283408
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 311 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423268.1; RP11-631F7.1-001; OTTHUMT00000042618.1; NONHSAT115472
Alternative gene names: ENSG00000224658.1; RP11-631F7.1; OTTHUMG00000015772.1; AL513164.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -199.4852 non-coding 
CPAT coding probability 2.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZC3H12D-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZC3H12D-4:1
4.0 lnc-ZC3H12D-4:1
4.1 lnc-ZC3H12D-4:1
5.0 lnc-ZC3H12D-4:1
5.1 lnc-RAET1G-26:2
5.2 lnc-ZC3H12D-4:1