Transcript: lnc-ZNF680-6:1

Basic information

LNCipedia transcript ID: lnc-ZNF680-6:1 
LNCipedia gene ID: lnc-ZNF680-6
Ensembl Gene ID: ENSG00000232817
Ensembl Transcript ID: ENST00000450077
Location (hg38): chr7:63388808-63393657
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 528 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000450077; ENST00000450077.1; RP11-73B2.4-001; OTTHUMT00000344029.1; NONHSAT120912
Alternative gene names: ENSG00000232817; RP11-73B2.4; ENSG00000232817.1; OTTHUMG00000156386.1; AC073188.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.7511 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF680-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF680-6:1
3.1 lnc-ZNF680-6:1
4.0 lnc-ZNF680-6:1
4.1 lnc-ZNF680-6:1
5.0 lnc-ZNF680-6:1
5.1 lnc-PSPH-47:1
5.2 lnc-ZNF680-6:1