Transcript: lnc-ZNF680-8:1

Basic information

LNCipedia transcript ID: lnc-ZNF680-8:1 
LNCipedia gene ID: lnc-ZNF680-8
Ensembl Gene ID: ENSG00000226587
Ensembl Transcript ID: ENST00000426550
Location (hg38): chr7:63326674-63354326
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 517 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426550.1; RP5-905H7.9-001; OTTHUMT00000343681.1; NONHSAT120901
Alternative gene names: ENSG00000226587.1; RP5-905H7.9; OTTHUMG00000156272.1; AC006455.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.5065 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF680-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF680-8:1
4.0 lnc-ZNF680-8:1
4.1 lnc-ZNF680-8:1
5.0 lnc-ZNF680-8:1
5.1 lnc-PSPH-40:1
5.2 lnc-ZNF680-8:1