Transcript: BCAR4:6

Basic information

LNCipedia transcript ID: BCAR4:6 
HGNC Gene Symbol: BCAR4    
HGNC Full Gene Name: breast cancer anti-estrogen resistance 4
Ensembl Gene ID: ENSG00000262117
Ensembl Transcript ID: ENST00000571259
Location (hg38): chr16:11819829-11828828
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 669 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000571259.1; BCAR4-005; OTTHUMT00000437082.1; NONHSAT140592; ENST00000571259.5
Alternative gene names: ENSG00000262117.1; BCAR4; OTTHUMG00000177469.1; ENSG00000262117.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.0678 non-coding 
CPAT coding probability 18.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BCAR4:6 no no no no

Available literature

  1. Chen (2015), Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA., Sci Rep
  2. Na (2015), Long non-coding RNA UCA1 contributes to the progression of prostate cancer and regulates proliferation through KLF4-KRT6/13 signaling pathway., Int J Clin Exp Med
  3. Pei (2015), Notch-1 promotes breast cancer cells proliferation by regulating LncRNA GAS5., Int J Clin Exp Med
  4. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  5. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  6. Xing (2015), LncRNA BCAR4 wires up signaling transduction in breast cancer., RNA Biol
  7. Xing (2014), lncRNA directs cooperative epigenetic regulation downstream of chemokine signals., Cell
  8. Angulo (2013), Breast-cancer anti-estrogen resistance 4 (BCAR4) encodes a novel maternal-effect protein in bovine and is expressed in the oocyte of humans and other non-rodent mammals., Hum. Reprod.
  9. Chen (2013), LncRNADisease: a database for long-non-coding RNA-associated diseases., Nucleic Acids Res.
  10. Meijer (2006), Functional screen for genes responsible for tamoxifen resistance in human breast cancer cells., Mol. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RSL1D1-1:4
4.0 BCAR4:6
4.1 BCAR4:6
5.0 BCAR4:6
5.1 BCAR4:6
5.2 BCAR4:6