Transcript: C8orf34-AS1:1

Basic information

LNCipedia transcript ID: C8orf34-AS1:1 
HGNC Gene Symbol: C8orf34-AS1    
HGNC Full Gene Name: C8orf34 antisense RNA 1
Ensembl Gene ID: ENSG00000248801
Ensembl Transcript ID: ENST00000512294
RefSeq ID: NR_038877
Location (hg38): chr8:68303468-68331491
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1600 bp
Exons: 3
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_038877; ENST00000512294.6; NR_038877.1
Alternative gene names: ENSG00000248801.6; C8orf34-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.3128 non-coding 
CPAT coding probability 6.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
C8orf34-AS1:1 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-664D7.4.1-4:1
4.0 C8orf34-AS1:1
4.1 C8orf34-AS1:1
5.0 C8orf34-AS1:1
5.1 C8orf34-AS1:1
5.2 C8orf34-AS1:1