Transcript: CADM2-AS1:1

Basic information

LNCipedia transcript ID: CADM2-AS1:1 
HGNC Gene Symbol: CADM2-AS1    
HGNC Full Gene Name: CADM2 antisense RNA 1
Ensembl Gene ID: ENSG00000239519
Ensembl Transcript ID: ENST00000476021
Location (hg38): chr3:85992183-86028007
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2656 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000476021.1; CADM2-AS1-001; OTTHUMT00000352814.1; NONHSAT090661
Alternative gene names: ENSG00000239519.1; CADM2-AS1; OTTHUMG00000158987.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.5495 non-coding 
CPAT coding probability 3.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CADM2-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VGLL3-4:1
4.0 CADM2-AS1:1
4.1 CADM2-AS1:1
5.0 CADM2-AS1:1
5.1 CADM2-AS1:1
5.2 CADM2-AS1:1