Transcript: CD27-AS1:5

Basic information

LNCipedia transcript ID: CD27-AS1:5 
HGNC Gene Symbol: CD27-AS1    
HGNC Full Gene Name: CD27 antisense RNA 1
Ensembl Gene ID: ENSG00000215039
Ensembl Transcript ID: ENST00000535639
RefSeq ID: NR_015382
Location (hg38): chr12:6439001-6451517
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2364 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000535639; ENST00000535639.1; CD27-AS1-001; OTTHUMT00000399249.1; NONHSAT026070; NR_015382; ENST00000535639.5; NR_015382.2
Alternative gene names: ENSG00000215039; AC005840.1; ENSG00000215039.2; CD27-AS1; OTTHUMG00000168315.1; ENSG00000215039.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.021 non-coding 
CPAT coding probability 3.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CD27-AS1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VAMP1-1:3
3.1 lnc-VAMP1-1:3
4.0 CD27-AS1:5
4.1 CD27-AS1:5
5.0 CD27-AS1:5
5.1 CD27-AS1:5
5.2 CD27-AS1:5