Transcript: EPHA1-AS1:1

Basic information

LNCipedia transcript ID: EPHA1-AS1:1 
HGNC Gene Symbol: EPHA1-AS1    
HGNC Full Gene Name: EPHA1 antisense RNA 1
Ensembl Gene ID: ENSG00000229153
Ensembl Transcript ID: ENST00000429289
RefSeq ID: NR_033897
Location (hg38): chr7:143407813-143523449
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 5018 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000429289; ENST00000429289.1; AC092214.10-001; OTTHUMT00000342151.1; NONHSAT123872; ENST00000429289.5; NR_033897.1
Alternative gene names: ENSG00000229153; AC092214.10; ENSG00000229153.1; OTTHUMG00000155893.1; EPHA1-AS1; ENSG00000229153.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.7405 non-coding 
CPAT coding probability 11.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EPHA1-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZYX-1:1
3.1 lnc-ZYX-1:1
4.0 EPHA1-AS1:1
4.1 EPHA1-AS1:1
5.0 EPHA1-AS1:1
5.1 EPHA1-AS1:1
5.2 EPHA1-AS1:1