Transcript: FAM138A:3

Basic information

LNCipedia transcript ID: FAM138A:3 ?
HGNC Gene Symbol: FAM138A    ?
HGNC Full Gene Name: family with sequence similarity 138 member A
Location (hg19): chr1:35245-36073
Strand: -
Class: intergenic
Transcript size: 590 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: NONHSAT000014; ENST00000461467.1
Alternative gene names: ENSG00000237613.2; FAM138A; F379


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -33.3198 non-coding ?
CPAT coding probability 3.88% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
FAM138A:3 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy:
Randfold P-value:

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
3.1 lnc-FAM138A-6:3