Transcript: FAM138B:2

Basic information

LNCipedia transcript ID: FAM138B:2 
LNCipedia gene ID: FAM138B
Location (hg38): chr2:113577382-113578909
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1093 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00002984; ENST00000432583; ENST00000432583.1; FAM138B-002; OTTHUMT00000109027.2; NONHSAT073804
Alternative gene names: XLOC_001632; linc-RABL2A-1; ENSG00000226516; FAM138B; ENSG00000226516.2; OTTHUMG00000047820.2; F379


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.9779 non-coding 
CPAT coding probability 2.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM138B:2 no no no no

Available literature

  1. Wong (2004), Diverse fates of paralogs following segmental duplication of telomeric genes., Genomics
  2. Mah (2001), Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RABL2A-2:2
3.1 lnc-RABL2A-2:2
4.0 FAM138B:2
4.1 FAM138B:2
5.0 FAM138B:2
5.1 FAM138B:2
5.2 FAM138B:2