Transcript: FAM138B:3

Basic information

LNCipedia transcript ID: FAM138B:3 
HGNC Gene Symbol: FAM138B    
HGNC Full Gene Name: family with sequence similarity 138 member B
Ensembl Gene ID: ENSG00000226516
Ensembl Transcript ID: ENST00000446648
RefSeq ID: NR_026821
Location (hg38): chr2:113577382-113578852
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1130 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT073802; NR_026821; ENST00000446648.2; ENST00000446648.6; NR_026821.1
Alternative gene names: ENSG00000226516.3; FAM138B; ENSG00000226516.7; F379


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.9779 non-coding 
CPAT coding probability 3.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM138B:3 no no no no

Available literature

  1. Wong (2004), Diverse fates of paralogs following segmental duplication of telomeric genes., Genomics
  2. Mah (2001), Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RABL2A-2:4
4.0 FAM138B:3
4.1 FAM138B:3
5.0 FAM138B:3
5.1 FAM138B:3
5.2 FAM138B:3