Transcript: FAM66E:4

Basic information

LNCipedia transcript ID: FAM66E:4 
HGNC Gene Symbol: FAM66E    
HGNC Full Gene Name: family with sequence similarity 66 member E
Ensembl Gene ID: ENSG00000225725
Ensembl Transcript ID: ENST00000533615
Location (hg38): chr8:7955074-7990697
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2087 bp
Exons: 8
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533615; ENST00000533615.1; FAM66E-002; OTTHUMT00000383841.1; NONHSAT124842
Alternative gene names: ENSG00000225725; FAM66E; ENSG00000225725.3; OTTHUMG00000165403.2; ENSG00000225725.4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 126.9319 coding 
CPAT coding probability 44.58% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FAM66E:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF705B-1:2
3.1 lnc-ZNF705B-1:2
4.0 FAM66E:4
4.1 FAM66E:4
5.0 FAM66E:4
5.1 FAM66E:4
5.2 FAM66E:4