Transcript: FOXG1-AS1:4

Basic information

LNCipedia transcript ID: FOXG1-AS1:4 
HGNC Gene Symbol: FOXG1-AS1    
HGNC Full Gene Name: FOXG1 antisense RNA 1
Ensembl Gene ID: ENSG00000257126
Ensembl Transcript ID: ENST00000546560
Location (hg38): chr14:28729510-28765263
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 538 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546560.1; RP11-966I7.1-002; OTTHUMT00000408585.1; NONHSAT036156; ENST00000546560.5
Alternative gene names: ENSG00000257126.1; RP11-966I7.1; OTTHUMG00000170343.1; ENSG00000257126.5; FOXG1-AS1; FOXG1-AS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.0935 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FOXG1-AS1:4 yes no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  2. Velmeshev (2013), Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders., Mol Autism


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRKD1-8:3
4.0 FOXG1-AS1:4
4.1 FOXG1-AS1:4
5.0 FOXG1-AS1:4
5.1 FOXG1-AS1:4
5.2 FOXG1-AS1:4

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