Transcript: GPC5-AS2:2

Basic information

LNCipedia transcript ID: GPC5-AS2:2 
HGNC Gene Symbol: GPC5-AS2    
HGNC Full Gene Name: GPC5 antisense RNA 2
Ensembl Gene ID: ENSG00000232885
Ensembl Transcript ID: ENST00000417589
Location (hg38): chr13:92339794-92340603
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 401 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000417589.1; GPC5-AS2-001; OTTHUMT00000045450.1; NONHSAT034701
Alternative gene names: ENSG00000232885.1; GPC5-AS2; OTTHUMG00000017197.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.7576 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GPC5-AS2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DCT-5:1
4.0 GPC5-AS2:2
4.1 GPC5-AS2:2
5.0 GPC5-AS2:2
5.1 GPC5-AS2:2
5.2 GPC5-AS2:2