Transcript: HCP5:2

Basic information

LNCipedia transcript ID: HCP5:2 
LNCipedia gene ID: HCP5
RefSeq ID: NR_040662
Location (hg38): chr6:31463180-31465809
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2539 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT108773; NR_040662; NR_040662.1
Alternative gene names: D6S2650E; P5-1; HCP5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.7095 non-coding 
CPAT coding probability 12.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCP5:2 no no no no

Available literature

  1. Jiang (2015), LncRNA2Function: a comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data., BMC Genomics
  2. Kulski (1999), The P5 multicopy gene family in the MHC is related in sequence to human endogenous retroviruses HERV-L and HERV-16., Immunogenetics
  3. Vernet (1993), A novel coding sequence belonging to a new multicopy gene family mapping within the human MHC class I region., Immunogenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MICB-3:7
4.0 HCP5:2
4.1 HCP5:2
5.0 HCP5:2
5.1 HCP5:2
5.2 HCP5:2