Transcript: IFNG-AS1:3

Basic information

LNCipedia transcript ID: IFNG-AS1:3 
LNCipedia gene ID: IFNG-AS1
RefSeq ID: NR_104124
Location (hg38): chr12:67989445-68021327
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1909 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104124; NR_104124.1
Alternative gene names: Tmevpg1; LincR-Ifng-3'AS; NEST; IFNG-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.6663 non-coding 
CPAT coding probability 2.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
IFNG-AS1:3 no no no no

Available literature

  1. Peng (2015), The Long Noncoding RNA IFNG-AS1 Promotes T Helper Type 1 Cells Response in Patients with Hashimoto's Thyroiditis., Sci Rep
  2. Spurlock (2015), Expression and functions of long noncoding RNAs during human T helper cell differentiation., Nat Commun
  3. Collier (2014), Regulation of the Th1 genomic locus from Ifng through Tmevpg1 by T-bet., J. Immunol.
  4. Hu (2013), Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation., Nat. Immunol.
  5. Vigneau (2001), Homology between a 173-kb region from mouse chromosome 10, telomeric to the Ifng locus, and human chromosome 12q15., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DYRK2-4:5
4.0 IFNG-AS1:3
4.1 IFNG-AS1:3
5.0 IFNG-AS1:3
5.1 IFNG-AS1:3
5.2 IFNG-AS1:3