Transcript: JARID2-AS1:1

Basic information

LNCipedia transcript ID: JARID2-AS1:1 
LNCipedia gene ID: JARID2-AS1
RefSeq ID: NR_120502
Location (hg38): chr6:15247815-15248696
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 517 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120502; NR_120502.1
Alternative gene names: ; JARID2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -119.5042 non-coding 
CPAT coding probability 9.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
JARID2-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DTNBP1-3:3
4.0 JARID2-AS1:1
4.1 JARID2-AS1:1
5.0 JARID2-AS1:1
5.1 JARID2-AS1:1
5.2 JARID2-AS1:1