Transcript: KRBOX1-AS1:1

Basic information

LNCipedia transcript ID: KRBOX1-AS1:1 
HGNC Gene Symbol: KRBOX1-AS1    
HGNC Full Gene Name: KRBOX1 antisense RNA 1
Ensembl Gene ID: ENSG00000206552
Ensembl Transcript ID: ENST00000447834
Location (hg38): chr3:42934252-42936785
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2134 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447834; ENST00000447834.1; KRBOX1-AS1-001; OTTHUMT00000344229.1; NONHSAT089273
Alternative gene names: ENSG00000206552; RP11-141M3.3; ENSG00000206552.4; KRBOX1-AS1; OTTHUMG00000156447.1; FLJ32776


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.0611 non-coding 
CPAT coding probability 10.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KRBOX1-AS1:1 no no no no

Available literature

  1. Ma (2015), Co‑expression of the carbamoyl‑phosphate synthase 1 gene and its long non‑coding RNA correlates with poor prognosis of patients with intrahepatic cholangiocarcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CYP8B1-1:1
3.1 lnc-CYP8B1-1:1
4.0 KRBOX1-AS1:1
4.1 KRBOX1-AS1:1
5.0 KRBOX1-AS1:1
5.1 KRBOX1-AS1:1
5.2 KRBOX1-AS1:1