Transcript: LCMT1-AS1:3

Basic information

LNCipedia transcript ID: LCMT1-AS1:3 
HGNC Gene Symbol: LCMT1-AS1    
HGNC Full Gene Name: LCMT1 antisense RNA 1
Ensembl Gene ID: ENSG00000260448
Ensembl Transcript ID: ENST00000563962
Location (hg38): chr16:25086333-25111479
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 766 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563962.1; RP11-449H11.1-001; OTTHUMT00000435758.1; NONHSAT141383; ENST00000563962.5
Alternative gene names: ENSG00000260448.1; RP11-449H11.1; OTTHUMG00000177185.1; ENSG00000260448.5; LCMT1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.4683 non-coding 
CPAT coding probability 6.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LCMT1-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARHGAP17-2:2
4.0 LCMT1-AS1:3
4.1 LCMT1-AS1:3
5.0 LCMT1-AS1:3
5.1 LCMT1-AS1:3
5.2 LCMT1-AS1:3