Transcript: LIFR-AS1:3

Basic information

LNCipedia transcript ID: LIFR-AS1:3 
LNCipedia gene ID: LIFR-AS1
RefSeq ID: NR_103554
Location (hg38): chr5:38556786-38671216
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3386 bp
Exons: 9
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT101097; NR_103554; NR_103554.1
Alternative gene names: ; LIFR-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.401 non-coding 
CPAT coding probability 5.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LIFR-AS1:3 no no no no

Available literature

  1. Liu (2018), Functional role of a long non-coding RNA LIFR-AS1/miR-29a/TNFAIP3 axis in colorectal cancer resistance to pohotodynamic therapy., Biochim. Biophys. Acta
  2. Wang (2016), Identifying the crosstalk of dysfunctional pathways mediated by lncRNAs in breast cancer subtypes., Mol Biosyst


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EGFLAM-2:4
4.0 LIFR-AS1:3
4.1 LIFR-AS1:3
5.0 LIFR-AS1:3
5.1 LIFR-AS1:3
5.2 LIFR-AS1:3