Transcript: LIFR-AS1:4

Basic information

LNCipedia transcript ID: LIFR-AS1:4 
LNCipedia gene ID: LIFR-AS1
Location (hg38): chr5:38556786-38608857
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3798 bp
Exons: 3
Sources: Refseq - Dec 2014
Alternative transcript names: NR_103553
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.401 non-coding 
CPAT coding probability 4.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LIFR-AS1:4 no no no no

Available literature

  1. Liu (2018), Functional role of a long non-coding RNA LIFR-AS1/miR-29a/TNFAIP3 axis in colorectal cancer resistance to pohotodynamic therapy., Biochim. Biophys. Acta
  2. Wang (2016), Identifying the crosstalk of dysfunctional pathways mediated by lncRNAs in breast cancer subtypes., Mol Biosyst


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EGFLAM-2:5
4.0 LIFR-AS1:4
4.1 LIFR-AS1:4
5.0 LIFR-AS1:4
5.1 LIFR-AS1:4
5.2 LIFR-AS1:4