Transcript: LINC00353:2

Basic information

LNCipedia transcript ID: LINC00353:2 
HGNC Gene Symbol: LINC00353    
HGNC Full Gene Name: long intergenic non-protein coding RNA 353
Ensembl Gene ID: ENSG00000236176
Ensembl Transcript ID: ENST00000435401
Location (hg38): chr13:89548691-89553804
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 685 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021683; ENST00000435401; ENST00000435401.1; LINC00353-002; OTTHUMT00000045431.1; NONHSAT034631
Alternative gene names: XLOC_010686; linc-SLITRK6-5; ENSG00000236176; RP11-75N6.2; ENSG00000236176.1; LINC00353; OTTHUMG00000017179.1; ENSG00000236176.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.9182 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00353:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK6-12:1
3.1 lnc-SLITRK6-12:1
4.0 LINC00353:2
4.1 LINC00353:2
5.0 LINC00353:2
5.1 LINC00353:2
5.2 LINC00353:2