Transcript: LINC00428:5

Basic information

LNCipedia transcript ID: LINC00428:5 
HGNC Gene Symbol: LINC00428    
HGNC Full Gene Name: long intergenic non-protein coding RNA 428
Ensembl Gene ID: ENSG00000229546
Ensembl Transcript ID: ENST00000415620
Location (hg38): chr13:42842414-42842887
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 227 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021640; ENST00000415620; ENST00000415620.1; RP11-366O17.3-001; OTTHUMT00000044707.1; NONHSAT140122
Alternative gene names: XLOC_010583; linc-KIAA0564-1; ENSG00000229546; RP11-366O17.3; ENSG00000229546.1; OTTHUMG00000016811.1; LINC00428;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -317.0934 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00428:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EPSTI1-2:1
3.1 lnc-EPSTI1-2:1
4.0 LINC00428:5
4.1 LINC00428:5
5.0 LINC00428:5
5.1 LINC00428:5
5.2 LINC00428:5