Transcript: LINC00467:4

Basic information

LNCipedia transcript ID: LINC00467:4 
LNCipedia gene ID: LINC00467
Location (hg38): chr1:211382803-211432536
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 711 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000423222; ENST00000423222.1; LINC00467-001; OTTHUMT00000089831.3
Alternative gene names: ENSG00000153363; C1orf97; ENSG00000153363.8; LINC00467; OTTHUMG00000036998.3; MGC14801


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.3505 non-coding 
CPAT coding probability 17.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00467:4 no no no no

Available literature

  1. Atmadibrata (2014), The novel long noncoding RNA linc00467 promotes cell survival but is down-regulated by N-Myc., PLoS ONE
  2. Pichler (2014), Long noncoding RNA in neuroblastoma: new light on the (old) N-Myc story., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRAF5-1:2
3.1 lnc-TRAF5-1:2
4.0 LINC00467:4
4.1 LINC00467:4
5.0 LINC00467:4
5.1 LINC00467:4
5.2 LINC00467:4