Transcript: LINC00474:1

Basic information

LNCipedia transcript ID: LINC00474:1 
HGNC Gene Symbol: LINC00474    
HGNC Full Gene Name: long intergenic non-protein coding RNA 474
Ensembl Gene ID: ENSG00000204148
Ensembl Transcript ID: ENST00000374014
Location (hg38): chr9:115888169-115925207
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 769 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000374014; ENST00000374014.3; LINC00474-001; OTTHUMT00000053795.3
Alternative gene names: ENSG00000204148; C9orf27; ENSG00000204148.3; LINC00474; OTTHUMG00000020551.3; EST-YD1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.7858 non-coding 
CPAT coding probability 5.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00474:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAPPA-AS1-1:1
3.1 lnc-PAPPA-AS1-3:1
4.0 LINC00474:1
4.1 LINC00474:1
5.0 LINC00474:1
5.1 LINC00474:1
5.2 LINC00474:1