Transcript: LINC00476:10

Basic information

LNCipedia transcript ID: LINC00476:10 
HGNC Gene Symbol: LINC00476    
HGNC Full Gene Name: long intergenic non-protein coding RNA 476
Ensembl Gene ID: ENSG00000175611
Ensembl Transcript ID: ENST00000427259
Location (hg38): chr9:95869840-95875270
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 893 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427259; ENST00000427259.1; LINC00476-005; OTTHUMT00000053243.1
Alternative gene names: ENSG00000175611; C9orf130; ENSG00000175611.6; LINC00476; OTTHUMG00000020286.2; ENSG00000175611.7; ENSG00000175611.11;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.7163 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00476:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTCH1-3:5
3.1 lnc-PTCH1-3:5
4.0 LINC00476:10
4.1 LINC00476:10
5.0 LINC00476:10
5.1 LINC00476:10
5.2 LINC00476:10