Transcript: LINC00476:6

Basic information

LNCipedia transcript ID: LINC00476:6 
HGNC Gene Symbol: LINC00476    
HGNC Full Gene Name: long intergenic non-protein coding RNA 476
Ensembl Gene ID: ENSG00000175611
Ensembl Transcript ID: ENST00000321517
Location (hg38): chr9:95870284-95875976
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1269 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000321517; ENST00000321517.3; LINC00476-001; OTTHUMT00000053239.2
Alternative gene names: ENSG00000175611; C9orf130; ENSG00000175611.6; LINC00476; OTTHUMG00000020286.2; ENSG00000175611.7; ENSG00000175611.11;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.0526 non-coding 
CPAT coding probability 57.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00476:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTCH1-3:2
3.1 lnc-PTCH1-3:2
4.0 LINC00476:6
4.1 LINC00476:6
5.0 LINC00476:6
5.1 LINC00476:6
5.2 LINC00476:6