Transcript: LINC00476:8

Basic information

LNCipedia transcript ID: LINC00476:8 
LNCipedia gene ID: LINC00476
Location (hg38): chr9:95758610-95875480
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1117 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000433656; ENST00000433656.1; LINC00476-002; OTTHUMT00000053240.1; NONHSAT133389
Alternative gene names: ENSG00000175611; C9orf130; ENSG00000175611.6; LINC00476; OTTHUMG00000020286.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.264 non-coding 
CPAT coding probability 2.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00476:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTCH1-3:4
3.1 lnc-PTCH1-3:4
4.0 LINC00476:8
4.1 LINC00476:8
5.0 LINC00476:8
5.1 LINC00476:8
5.2 LINC00476:8