Transcript: LINC00671:5

Basic information

LNCipedia transcript ID: LINC00671:5 
HGNC Gene Symbol: LINC00671    
HGNC Full Gene Name: long intergenic non-protein coding RNA 671
Ensembl Gene ID: ENSG00000213373
Ensembl Transcript ID: ENST00000417193
Location (hg38): chr17:42879488-42898700
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 560 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000417193; ENST00000417193.1; AC100793.2-003; OTTHUMT00000280519.1; NONHSAT146899; ENST00000417193.5
Alternative gene names: ENSG00000213373; AC100793.2; ENSG00000213373.3; OTTHUMG00000132654.2; LINC00671; ENSG00000213373.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.9256 non-coding 
CPAT coding probability 69.73% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00671:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AARSD1-1:4
3.1 lnc-AARSD1-1:4
4.0 LINC00671:5
4.1 LINC00671:5
5.0 LINC00671:5
5.1 LINC00671:5
5.2 LINC00671:5