Transcript: LINC00682:4

Basic information

LNCipedia transcript ID: LINC00682:4 
HGNC Gene Symbol: LINC00682    
HGNC Full Gene Name: long intergenic non-protein coding RNA 682
Ensembl Gene ID: ENSG00000245870
Ensembl Transcript ID: ENST00000499082
Location (hg38): chr4:41879521-41882570
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1384 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499082; ENST00000499082.2; RP11-457P14.4-002; OTTHUMT00000360960.1; NONHSAT096176
Alternative gene names: ENSG00000245870; RP11-457P14.4; ENSG00000245870.2; OTTHUMG00000160528.2; LINC00682; ; ENSG00000245870.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.1885 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00682:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHOX2B-1:3
3.1 lnc-PHOX2B-2:3
4.0 LINC00682:4
4.1 LINC00682:4
5.0 LINC00682:4
5.1 LINC00682:4
5.2 LINC00682:4