Transcript: LINC00837:1

Basic information

LNCipedia transcript ID: LINC00837:1 
HGNC Gene Symbol: LINC00837    
HGNC Full Gene Name: long intergenic non-protein coding RNA 837
Ensembl Gene ID: ENSG00000235824
Ensembl Transcript ID: ENST00000446012
Location (hg38): chr10:28792569-28796113
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 596 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017943; ENST00000446012; ENST00000446012.1; RP11-478H13.2-002; OTTHUMT00000047377.1
Alternative gene names: XLOC_008762; linc-MPP7-3; ENSG00000235824; RP11-478H13.2; ENSG00000235824.1; OTTHUMG00000017876.1; ENSG00000235824.3; LINC00837; ENSG00000235824.4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.8333 non-coding 
CPAT coding probability 3.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00837:1 no no no no

Available literature

  1. Ha (2014), A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MPP7-3:1
3.1 lnc-MPP7-4:1
4.0 LINC00837:1
4.1 LINC00837:1
5.0 LINC00837:1
5.1 LINC00837:1
5.2 LINC00837:1