Transcript: LINC00837:2

Basic information

LNCipedia transcript ID: LINC00837:2 
LNCipedia gene ID: LINC00837
RefSeq ID: NR_038374
Location (hg38): chr10:28789311-28796050
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4014 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT011959; NR_038374; NR_038374.1
Alternative gene names: ; LINC00837


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.0197 non-coding 
CPAT coding probability 12.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00837:2 no no no no

Available literature

  1. Ha (2014), A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MPP7-4:6
4.0 LINC00837:2
4.1 LINC00837:2
5.0 LINC00837:2
5.1 LINC00837:2
5.2 LINC00837:2