Transcript: LINC00837:7

Basic information

LNCipedia transcript ID: LINC00837:7 
LNCipedia gene ID: LINC00837
Location (hg38): chr10:28789188-28795973
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3958 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000443246; ENST00000443246.1; RP11-478H13.2-001; OTTHUMT00000047376.1
Alternative gene names: ENSG00000235824; RP11-478H13.2; ENSG00000235824.1; OTTHUMG00000017876.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.0197 non-coding 
CPAT coding probability 12.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00837:7 no no no no

Available literature

  1. Ha (2014), A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MPP7-3:3
3.1 lnc-MPP7-4:3
4.0 LINC00837:7
4.1 LINC00837:7
5.0 LINC00837:7
5.1 LINC00837:7
5.2 LINC00837:7