Transcript: LINC00837:8

Basic information

LNCipedia transcript ID: LINC00837:8 
HGNC Gene Symbol: LINC00837    
HGNC Full Gene Name: long intergenic non-protein coding RNA 837
Ensembl Gene ID: ENSG00000235824
Ensembl Transcript ID: ENST00000608061
Location (hg38): chr10:28792692-28795972
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 555 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608061.1
Alternative gene names: ENSG00000235824.3; LINC00837; ENSG00000235824.4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.5764 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00837:8 no no no no

Available literature

  1. Ha (2014), A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MPP7-4:8
4.0 LINC00837:8
4.1 LINC00837:8
5.0 LINC00837:8
5.1 LINC00837:8
5.2 LINC00837:8