Transcript: LINC00958:14

Basic information

LNCipedia transcript ID: LINC00958:14 
LNCipedia gene ID: LINC00958
Location (hg38): chr11:12979476-12986145
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1540 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019581; NONHSAT018084
Alternative gene names: XLOC_009378; linc-DKK3-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.2083 non-coding 
CPAT coding probability 1.90% non-coding 
Bazzini small ORFs 1 coding 
orfFrame7.606231117
covF1Prop0.103448276
seqAAMPKLEEGESLSSPHYEFSSIKDFFFHDFENN

In stringent set: no

Locus conservation

Locus conservation?
LINC00958:14 no no no no

Available literature

  1. Guo (2018), Long Noncoding RNA LINC00958 Accelerates Gliomagenesis Through Regulating miR-203/CDK2., DNA Cell Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTBD10-3:10
3.1 lnc-BTBD10-3:10
4.0 LINC00958:14
4.1 LINC00958:14
5.0 LINC00958:14
5.1 LINC00958:14
5.2 LINC00958:14