Transcript: LINC00958:2

Basic information

LNCipedia transcript ID: LINC00958:2 
LNCipedia gene ID: LINC00958
Location (hg38): chr11:12979614-12989548
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1559 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019120; NONHSAT018086
Alternative gene names: XLOC_009378; linc-DKK3-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.0352 non-coding 
CPAT coding probability 1.90% non-coding 
Bazzini small ORFs 1 coding 
orfFrame7.606231117
seqAAMPKLEEGESLSSPHYEFSSIKDFFFHDFENN
covF1Prop0.103448276

In stringent set: no

Locus conservation

Locus conservation?
LINC00958:2 no no no no

Available literature

  1. Guo (2018), Long Noncoding RNA LINC00958 Accelerates Gliomagenesis Through Regulating miR-203/CDK2., DNA Cell Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTBD10-3:2
3.1 lnc-BTBD10-3:2
4.0 LINC00958:2
4.1 LINC00958:2
5.0 LINC00958:2
5.1 LINC00958:2
5.2 LINC00958:2