Transcript: LINC00958:7

Basic information

LNCipedia transcript ID: LINC00958:7 
HGNC Gene Symbol: LINC00958    
HGNC Full Gene Name: long intergenic non-protein coding RNA 958
Ensembl Gene ID: ENSG00000251381
Ensembl Transcript ID: ENST00000534477
Location (hg38): chr11:12980211-12989539
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 888 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534477; ENST00000534477.1; CTC-497E21.4-003; OTTHUMT00000386998.1; NONHSAT018087; ENST00000534477.5
Alternative gene names: ENSG00000251381; CTC-497E21.4; ENSG00000251381.2; OTTHUMG00000165904.2; LINC00958; ENSG00000251381.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.5674 non-coding 
CPAT coding probability 1.97% non-coding 
Bazzini small ORFs 1 coding 
orfFrame7.606231117
covF1Prop0.103448276
seqAAMPKLEEGESLSSPHYEFSSIKDFFFHDFENN

In stringent set: no

Locus conservation

Locus conservation?
LINC00958:7 no no no no

Available literature

  1. Guo (2018), Long Noncoding RNA LINC00958 Accelerates Gliomagenesis Through Regulating miR-203/CDK2., DNA Cell Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTBD10-3:5
3.1 lnc-BTBD10-3:5
4.0 LINC00958:7
4.1 LINC00958:7
5.0 LINC00958:7
5.1 LINC00958:7
5.2 LINC00958:7