Transcript: LINC00987:2

Basic information

LNCipedia transcript ID: LINC00987:2 
LNCipedia gene ID: LINC00987
Location (hg38): chr12:9240003-9243039
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2459 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000427111; ENST00000427111.3; RP11-118B22.2-001; OTTHUMT00000399347.1
Alternative gene names: ENSG00000237248; RP11-118B22.2; ENSG00000237248.3; OTTHUMG00000168332.1; LINC00987;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.6891 non-coding 
CPAT coding probability 2.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00987:2 no no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLRG1-2:2
3.1 lnc-KLRG1-2:2
4.0 LINC00987:2
4.1 LINC00987:2
5.0 LINC00987:2
5.1 LINC00987:2
5.2 LINC00987:2