Transcript: LINC01047:2

Basic information

LNCipedia transcript ID: LINC01047:2 
HGNC Gene Symbol: LINC01047    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1047
Ensembl Gene ID: ENSG00000232225
Ensembl Transcript ID: ENST00000415193
RefSeq ID: NR_131229
Location (hg38): chr13:89214847-89236890
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 778 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT034621; ENST00000415193.1; ENST00000415193.5; NR_131229.1
Alternative gene names: ENSG00000232225.2; LINC01047; ENSG00000232225.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.059 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01047:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLITRK6-10:3
4.0 LINC01047:2
4.1 LINC01047:2
5.0 LINC01047:2
5.1 LINC01047:2
5.2 LINC01047:2