Transcript: LINC01186:7

Basic information

LNCipedia transcript ID: LINC01186:7 
HGNC Gene Symbol: LINC01186    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1186
Ensembl Gene ID: ENSG00000236751
Ensembl Transcript ID: ENST00000446884
Location (hg38): chrX:46325924-46327645
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 626 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446884; ENST00000446884.1; RP1-30G7.2-001; OTTHUMT00000056353.1; NONHSAT136830
Alternative gene names: ENSG00000236751; RP1-30G7.2; ENSG00000236751.1; OTTHUMG00000021416.1; LINC01186;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -336.0395 non-coding 
CPAT coding probability 1.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01186:7 no no no no

Available literature

  1. Hao (2017), Long noncoding RNA LINC01186, regulated by TGF-β/SMAD3, inhibits migration and invasion through Epithelial-Mesenchymal-Transition in lung cancer., Gene
  2. Gao (2014), Differential expression of long noncoding RNA in primary and recurrent nasopharyngeal carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF674-1:5
3.1 lnc-ZNF674-1:4
4.0 LINC01186:7
4.1 LINC01186:7
5.0 LINC01186:7
5.1 LINC01186:7
5.2 LINC01186:7