Transcript: LINC01187:4

Basic information

LNCipedia transcript ID: LINC01187:4 
LNCipedia gene ID: LINC01187
RefSeq ID: NR_108022
Location (hg38): chr5:170191647-170199141
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1334 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_108022; NR_108022.1
Alternative gene names: KIDR; LINC01187


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.5699 non-coding 
CPAT coding probability 3.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01187:4 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LCP2-2:8
4.0 LINC01187:4
4.1 LINC01187:4
5.0 LINC01187:4
5.1 LINC01187:4
5.2 LINC01187:4