Transcript: LINC01197:17

Basic information

LNCipedia transcript ID: LINC01197:17 
LNCipedia gene ID: LINC01197
Location (hg38): chr15:95276461-95289485
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1147 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000555332; ENST00000555332.1; CTD-2536I1.1-002; OTTHUMT00000415213.1; NONHSAT140264
Alternative gene names: ENSG00000248441; CTD-2536I1.1; ENSG00000248441.2; OTTHUMG00000171818.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.9488 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01197:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC016251.1-4:15
3.1 lnc-AC016251.1-8:15
4.0 LINC01197:17
4.1 LINC01197:17
5.0 LINC01197:17
5.1 LINC01197:17
5.2 LINC01197:17