Transcript: LINC01197:4

Basic information

LNCipedia transcript ID: LINC01197:4 
HGNC Gene Symbol: LINC01197    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1197
Ensembl Gene ID: ENSG00000248441
Ensembl Transcript ID: ENST00000556899
Location (hg38): chr15:95288288-95327129
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 614 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556899; ENST00000556899.1; CTD-2536I1.1-001; OTTHUMT00000415215.1; NONHSAT050197
Alternative gene names: ENSG00000248441; CTD-2536I1.1; ENSG00000248441.2; OTTHUMG00000171818.1; ENSG00000248441.6; LINC01197;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -163.4624 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01197:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC016251.1-4:4
3.1 lnc-AC016251.1-8:4
4.0 LINC01197:4
4.1 LINC01197:4
5.0 LINC01197:4
5.1 LINC01197:4
5.2 LINC01197:4