Transcript: LINC01204:1

Basic information

LNCipedia transcript ID: LINC01204:1 
HGNC Gene Symbol: LINC01204    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1204
Ensembl Gene ID: ENSG00000229563
Ensembl Transcript ID: ENST00000435394
RefSeq ID: NR_104645
Location (hg38): chrX:45505388-45523644
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2214 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000435394; TCONS_00016983; ENST00000435394.1; RP11-245M24.1-002; OTTHUMT00000056342.1; NONHSAT136794; NR_104645; ENST00000435394.5; NR_104645.1
Alternative gene names: ENSG00000229563; XLOC_007966; linc-ZNF673-4; RP11-245M24.1; ENSG00000229563.1; OTTHUMG00000021406.1; ENSG00000229563.2; ENSG00000229563.6; LINC01204;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.7624 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01204:1 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KDM6A-1:1
3.1 lnc-KDM6A-2:1
4.0 LINC01204:1
4.1 LINC01204:1
5.0 LINC01204:1
5.1 LINC01204:1
5.2 LINC01204:1