Transcript: LINC01219:1

Basic information

LNCipedia transcript ID: LINC01219:1 
LNCipedia gene ID: LINC01219
RefSeq ID: NR_126400
Location (hg38): chr11:1991096-1993469
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 722 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00019135; ENST00000418612; ENST00000418612.1; AC051649.6-001; OTTHUMT00000034754.1; NONHSAT017457; NR_126400; NR_126400.1
Alternative gene names: XLOC_009024; linc-TSPAN32-2; ENSG00000232987; AC051649.6; ENSG00000232987.1; OTTHUMG00000012473.1; LINC01219;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -192.3977 non-coding 
CPAT coding probability 15.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01219:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPL23-1:1
3.1 lnc-MRPL23-1:1
4.0 LINC01219:1
4.1 LINC01219:1
5.0 LINC01219:1
5.1 LINC01219:1
5.2 LINC01219:1