Transcript: LINC01242:1

Basic information

LNCipedia transcript ID: LINC01242:1 
HGNC Gene Symbol: LINC01242    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1242
Ensembl Gene ID: ENSG00000280683
Ensembl Transcript ID: ENST00000629369
Location (hg38): chr9:30388935-30575012
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1966 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000629369.1
Alternative gene names: ENSG00000280683.1; LINC01242; ; AL354704.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 47.2944 non-coding 
CPAT coding probability 32.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01242:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01242:1
4.1 LINC01242:1
5.0 LINC01242:1
5.1 LINC01242:1
5.2 LINC01242:1